STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trit1tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family. (461 aa)    
Predicted Functional Partners:
lta4h
Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.
 
    
 0.895
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.884
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
  
  
 0.878
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
     
 0.863
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
  
  
 0.852
LOC101170198
Lysosomal protein transmembrane 4 beta.
      
 0.840
LAPTM4B
Lysosomal protein transmembrane 4 beta.
      
 0.840
LOC101155570
Serine/threonine kinase 3 (STE20 homolog, yeast).
      
 0.827
ing3
Inhibitor of growth protein.
      
 0.778
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
  
 0.763
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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