STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167064Layilin a. (486 aa)    
Predicted Functional Partners:
atrn
Attractin.
      
 0.818
CLEC3B
C-type lectin domain family 3, member Bb.
      
 0.813
LOC101157725
Collectin subfamily member 10.
      
 0.614
SELE
Selectin E.
      
 0.586
stab1
Stabilin 1.
   
  
 0.564
ENSORLP00000043804
Uncharacterized protein.
    
 0.550
LOC101159550
Uncharacterized protein.
      
 0.503
Pla2r1
Fibronectin type-II domain-containing protein.
      
 0.499
cdhr5
Uncharacterized protein.
  
 
  0.418
tln2
Talin 2b.
    
 
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.