Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cfpUncharacterized protein. (573 aa)    
Predicted Functional Partners:
H2M6Q1_ORYLA
NTR domain-containing protein.
   
 0.962
c3-2
Uncharacterized protein.
   
 0.962
c3-1
Uncharacterized protein.
   
 0.944
H2LN81_ORYLA
Uncharacterized protein.
 
  
  0.780
H2LYU8_ORYLA
Uncharacterized protein.
 
  
  0.745
fkbp6
Peptidylprolyl isomerase.
    
  0.722
spag8
Sperm associated antigen 8.
    
   0.714
bf/c2
Bf/C2 protein; Belongs to the peptidase S1 family.
   
 0.710
ENSORLP00000027319
Uncharacterized protein.
 
 
 
  0.702
tsr3
Probable ribosome biogenesis protein tsr3; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.695
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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