STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161415Sosondowah ankyrin repeat domain family member Ab. (395 aa)    
Predicted Functional Partners:
c9h9orf116
Uncharacterized protein.
    
 0.633
diaph3
Diaphanous-related formin 3.
   
 0.506
diaph2
Diaphanous-related formin 2.
   
 0.506
DIAPH1
Diaphanous related formin 1.
   
 0.506
traf7
TNF receptor-associated factor 7.
    
 0.493
corin
Corin, serine peptidase.
    
 0.436
ift81
Intraflagellar transport 81 homolog.
    
 0.429
ccdc157
Coiled-coil domain containing 157.
   
 
 0.422
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.400
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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