Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mfsd2aMajor facilitator superfamily domain containing 2ab. (527 aa)    
Predicted Functional Partners:
LOC101164398
PRELI/MSF1 domain-containing protein.
      
 0.780
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
      
 0.717
LOC101157687
Actin binding Rho activating protein a.
      
 0.692
fam234b
Family with sequence similarity 234 member B.
      
 0.692
LOC101165831
4-hydroxyphenylpyruvate dioxygenase.
     
 0.671
LOC101171109
Hemojuvelin BMP co-receptor.
      
 0.661
LOC101165878
PRELI domain containing 3.
      
 0.659
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.652
lgmn
Legumain.
      
 0.616
lnx1
Ligand of numb-protein X 1.
      
 0.606
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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