STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd2aMajor facilitator superfamily domain containing 2ab. (527 aa)    
Predicted Functional Partners:
RRM2
Ribonucleotide reductase regulatory subunit M2.
      
 0.813
LOC110017318
Kruppel-like factor 6a.
      
 0.813
mcm5
DNA helicase; Belongs to the MCM family.
      
 0.590
fosl2
Fos-like antigen 2.
      
 0.519
JUND
BZIP domain-containing protein.
      
 0.518
plau
Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.
   
  
 0.514
tyms
Thymidylate synthetase.
    
  0.513
atf3
Activating transcription factor 3.
      
 0.502
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
  0.483
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.