STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171445Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)    
Predicted Functional Partners:
rb1
Retinoblastoma 1.
   
 0.968
rbl1
Retinoblastoma-like 1 (p107).
   
 0.950
LOC101154969
Protein phosphatase 1, regulatory (inhibitor) subunit 14Aa.
     
 0.946
WDR33
WD repeat domain 33.
   
 0.937
LOC101167032
Myosin, light chain 9a, regulatory.
   
 0.933
wdr82
WD repeat domain 82.
   
 0.930
LOC101173843
WD_REPEATS_REGION domain-containing protein.
   
 0.930
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.929
LOC101160287
Uncharacterized protein.
   
 0.926
LOC101172697
Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
   
 0.921
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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