STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cttnbp2nlCTTNBP2 N-terminal like a. (578 aa)    
Predicted Functional Partners:
LOC110014886
MOB family member 4, phocein.
    
 
 0.900
pdcd10
Programmed cell death 10b.
    
 
 0.882
LOC101159261
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
      
 0.813
LOC101162257
PPFIA binding protein 1a.
      
 0.813
LOC101174910
Cyclin D2, a; Belongs to the cyclin family.
      
 0.813
cct2
Uncharacterized protein.
    
   0.766
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
   0.766
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.764
tcp1
T-complex 1.
    
   0.762
strip1
Striatin interacting protein 1.
    
 
 0.733
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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