STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cttnbp2nlCTTNBP2 N-terminal like a. (578 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
    
 
 0.939
LOC110014886
MOB family member 4, phocein.
    
 
 0.892
LOC101159261
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
      
 0.812
strip1
Striatin interacting protein 1.
    
 
 0.800
LOC101159479
Striatin interacting protein 2.
    
 
 0.800
LOC101162257
PPFIA binding protein 1a.
   
  
 0.793
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 
 0.762
LOC101168392
Zinc finger, RAN-binding domain containing 1b.
    
 
 0.762
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.758
strn4
Striatin, calmodulin binding protein 4.
   
 
 0.757
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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