Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc39a7Solute carrier family 39 member 7. (476 aa)    
Predicted Functional Partners:
lhx9
LIM homeobox 9.
      
 0.880
LOC101163600
Uncharacterized protein.
    
 
 0.862
rps18
Ribosomal protein S18.
      
 0.824
hsd17b8
Hydroxysteroid (17-beta) dehydrogenase 8.
 
  
 
 0.811
pfdn6
Prefoldin subunit 6.
   
  
 0.794
slc30a7
Solute carrier family 30 member 7.
  
 0.787
slc17a5
Solute carrier family 17 member 5.
   
  
 0.774
slc30a5
Solute carrier family 30 member 5.
  
 0.771
slc30a6
Solute carrier family 30 member 6.
  
 0.756
slc30a3
Solute carrier family 30 member 2.
    
 
 0.743
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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