STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155225Extended synaptotagmin-like protein 2a. (869 aa)    
Predicted Functional Partners:
ENSORLP00000041927
Rabphilin 3A homolog (mouse), a.
      
 0.821
LOC101164943
Synaptotagmin XV.
     
 0.612
arl6ip5
PRA1 family protein.
    
 
 0.527
faf2
Fas associated factor family member 2.
    
   0.495
derl2
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
   0.495
rhof
Ras homolog family member F.
    
  0.485
LOC101165977
C2 domain-containing protein.
     
 0.485
LOC101173158
Receptor expression-enhancing protein.
   
 
 0.473
exoc1
Exocyst complex component 1.
   
 
 0.470
LOC101163833
Glycerol-3-phosphate acyltransferase 4.
      
 0.440
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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