STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170291Uncharacterized protein. (331 aa)    
Predicted Functional Partners:
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast).
   
 0.996
TOMM7
Translocase of outer mitochondrial membrane 7.
   
 0.995
tomm5
Translocase of outer mitochondrial membrane 5 homolog (yeast).
    
 0.991
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
   
 0.990
LOC101172049
Translocase of outer mitochondrial membrane 20b.
   
 0.990
LOC101169311
Translocase of outer mitochondrial membrane 20.
   
 0.980
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.975
pink1
PTEN induced kinase 1.
    
 0.972
tomm6
Translocase of outer mitochondrial membrane 6 homolog (yeast).
    
 0.943
timm50
Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
   
 0.921
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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