Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ebf3EBF transcription factor 3a. (548 aa)    
Predicted Functional Partners:
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
   0.605
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.531
LOC105353580
Stearoyl-CoA desaturase b; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.522
LOC101160599
Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.522
znf703
Zinc finger protein 703.
      
 0.491
ZNF703
Zinc finger protein 703.
      
 0.491
plaa
Phospholipase A2-activating protein.
    
   0.480
yod1
YOD1 deubiquitinase.
    
   0.480
LOC101162817
AAA domain-containing protein.
    
 
 0.449
WDR1
WD repeat domain 1.
      
 0.449
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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