Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
H2LMX3_ORYLAPTB domain-containing protein. (251 aa)    
Predicted Functional Partners:
LOC101164058
EPS8-like 3b.
 
      0.897
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.689
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.689
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
      
 0.509
crk
CRK proto-oncogene, adaptor protein.
      
 0.499
LOC101167616
Usher syndrome 1C.
   
 
 0.488
fcsk
Fucose kinase.
      
 0.482
vac14
Vac14 homolog (S. cerevisiae).
      
 0.480
cog4
Component of oligomeric golgi complex 4.
      
 0.474
rpl21
Ribosomal protein L21.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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