STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigirrSingle immunoglobulin and toll-interleukin 1 receptor (TIR) domain. (520 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
    
 0.786
LOC101159280
Uncharacterized protein.
     
 0.689
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
    
 0.652
LOC101169418
Fibrinogen C-terminal domain-containing protein.
   
 0.608
LOC101165534
Fibrinogen C-terminal domain-containing protein.
   
 0.608
LOC101161869
Fibrinogen C-terminal domain-containing protein.
   
 0.608
LOC101166698
Protein kinase domain-containing protein.
   
 0.538
LOC101160447
RAN binding protein 2.
    
 0.537
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.527
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.512
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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