STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LMZ3_ORYLAUncharacterized protein. (316 aa)    
Predicted Functional Partners:
spef2
Sperm flagellar 2.
   
 
 0.605
st6galnac6
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
   
    0.593
wdpcp
WD repeat containing planar cell polarity effector.
   
    0.574
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.567
rcl1
RNA terminal phosphate cyclase-like 1.
      
 0.535
tbx1
T-box transcription factor 1.
   
  
 0.527
LOC101160830
Uncharacterized protein.
   
  
 0.527
cfap221
Uncharacterized protein.
    
 
 0.482
spag17
Uncharacterized protein.
    
 
 0.450
ccdc189
Uncharacterized protein.
    
 
 0.427
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.