STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158703Uncharacterized protein. (478 aa)    
Predicted Functional Partners:
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.999
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.999
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.969
LOC101160203
VPS9 domain-containing protein.
    
 0.969
LOC101156469
Uncharacterized protein.
    
 0.967
LOC101171835
Uncharacterized protein.
    
 0.967
LOC101158748
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.967
LOC101158129
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
     
 0.962
rab5c
RAB5C, member RAS oncogene family.
   
 0.957
LOC101159835
RAB5A, member RAS oncogene family, a.
   
 0.957
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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