STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175317Tetraspanin. (236 aa)    
Predicted Functional Partners:
LOC101156484
Tetraspanin.
  
  
 
0.901
ENSORLP00000028318
Ig-like domain-containing protein.
    
 
 0.719
ptgfrn
Uncharacterized protein.
    
 
 0.719
LOC101173781
Tetraspanin.
   
 
 0.695
CD9
Tetraspanin.
   
 
 0.695
LOC101162281
Immunoglobulin superfamily, member 8.
    
 
 0.637
LOC100125525
Uncharacterized protein.
     
 0.595
LOC101156166
Syndecan binding protein (syntenin) 2.
    
 0.574
cd63
Tetraspanin.
   
 
 0.523
lamp1
Lysosomal associated membrane protein 1a.
   
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.