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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175317Tetraspanin. (236 aa)    
Predicted Functional Partners:
CD9
Tetraspanin.
  
 
 
0.695
LOC101173781
Tetraspanin.
  
 
 
0.694
ENSORLP00000028318
Ig-like domain-containing protein.
    
 
 0.662
ptgfrn
Uncharacterized protein.
    
 
 0.662
LOC100125525
Uncharacterized protein.
    
 0.597
cd63
Tetraspanin.
    
 
0.587
LOC101156528
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.558
LOC101155346
Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
      
 0.520
LOC101162281
Immunoglobulin superfamily, member 8.
    
 
 0.508
lamp1
Lysosomal associated membrane protein 1a.
   
 
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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