STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc21DnaJ heat shock protein family (Hsp40) member C21. (539 aa)    
Predicted Functional Partners:
nmd3
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
    
 
 0.798
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
  
 0.722
dnajc1
DnaJ (Hsp40) homolog, subfamily C, member 1.
   
 
0.719
Retreg1
Reticulophagy regulator 1.
   
 
 0.701
znf622
Zinc finger protein 622.
   
 
 0.701
LOC101170587
Proliferation-associated 2G4, b.
   
 
 0.699
pa2g4
Proliferation-associated 2G4, a.
   
 
 0.699
eif6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
 
 0.642
retreg2
Reticulophagy regulator family member 2.
   
 
 0.631
retreg3
Reticulophagy regulator family member 3.
   
 
 0.631
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.