bnip3 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bnip3

BCL2 interacting protein 3. (193 aa)

Predicted Functional Partners:

bcl2

0.987

LOC101165300

0.953

LOC101159503

0.952

map1lc3a

0.947

map1lc3b

0.947

ulk1

0.945

LOC101161855

0.944

LOC101156643

0.944

LOC101160603

0.944

GABARAPL2

0.934

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GABARAPL2	bnip3	ENSORLP00000038235	ENSORLP00000007434	GABA type A receptor associated protein like 2.	BCL2 interacting protein 3.	0.934
GABARAPL2	map1lc3a	ENSORLP00000038235	ENSORLP00000026217	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.727
GABARAPL2	map1lc3b	ENSORLP00000038235	ENSORLP00000039408	GABA type A receptor associated protein like 2.	RNA-dependent DNA polymerase.	0.727
GABARAPL2	ulk1	ENSORLP00000038235	ENSORLP00000013892	GABA type A receptor associated protein like 2.	Unc-51 like autophagy activating kinase 1.	0.822
LOC101156643	LOC101160603	ENSORLP00000037294	ENSORLP00000037761	Ras homolog, mTORC1 binding like 1.	Uncharacterized protein.	0.901
LOC101156643	LOC101161855	ENSORLP00000037294	ENSORLP00000004585	Ras homolog, mTORC1 binding like 1.	Ras homolog, mTORC1 binding.	0.901
LOC101156643	bnip3	ENSORLP00000037294	ENSORLP00000007434	Ras homolog, mTORC1 binding like 1.	BCL2 interacting protein 3.	0.944
LOC101156643	ulk1	ENSORLP00000037294	ENSORLP00000013892	Ras homolog, mTORC1 binding like 1.	Unc-51 like autophagy activating kinase 1.	0.725
LOC101159503	LOC101165300	ENSORLP00000041140	ENSORLP00000038040	BH4_2 domain-containing protein.	Uncharacterized protein.	0.902
LOC101159503	bcl2	ENSORLP00000041140	ENSORLP00000021005	BH4_2 domain-containing protein.	BCL2 apoptosis regulator b.	0.971
LOC101159503	bnip3	ENSORLP00000041140	ENSORLP00000007434	BH4_2 domain-containing protein.	BCL2 interacting protein 3.	0.952
LOC101160603	LOC101156643	ENSORLP00000037761	ENSORLP00000037294	Uncharacterized protein.	Ras homolog, mTORC1 binding like 1.	0.901
LOC101160603	LOC101161855	ENSORLP00000037761	ENSORLP00000004585	Uncharacterized protein.	Ras homolog, mTORC1 binding.	0.901
LOC101160603	bnip3	ENSORLP00000037761	ENSORLP00000007434	Uncharacterized protein.	BCL2 interacting protein 3.	0.944
LOC101160603	ulk1	ENSORLP00000037761	ENSORLP00000013892	Uncharacterized protein.	Unc-51 like autophagy activating kinase 1.	0.714
LOC101161855	LOC101156643	ENSORLP00000004585	ENSORLP00000037294	Ras homolog, mTORC1 binding.	Ras homolog, mTORC1 binding like 1.	0.901
LOC101161855	LOC101160603	ENSORLP00000004585	ENSORLP00000037761	Ras homolog, mTORC1 binding.	Uncharacterized protein.	0.901
LOC101161855	bnip3	ENSORLP00000004585	ENSORLP00000007434	Ras homolog, mTORC1 binding.	BCL2 interacting protein 3.	0.944
LOC101161855	ulk1	ENSORLP00000004585	ENSORLP00000013892	Ras homolog, mTORC1 binding.	Unc-51 like autophagy activating kinase 1.	0.659
LOC101165300	LOC101159503	ENSORLP00000038040	ENSORLP00000041140	Uncharacterized protein.	BH4_2 domain-containing protein.	0.902