Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcnx3Pecanex 3. (2256 aa)    
Predicted Functional Partners:
LOC101166009
Mitogen-activated protein kinase kinase kinase.
   
  
 0.757
LTBP3
Latent transforming growth factor beta binding protein 3.
    
 
 0.568
KLHL28
Kelch like family member 28.
    
 
 0.492
gpha2
Glycoprotein hormone subunit alpha 2.
      
 0.479
mif4gd
MIF4G domain containing a.
      
 0.478
preb
Prolactin regulatory element binding.
      
 0.464
allc
Allantoicase.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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