STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165088Uncharacterized protein. (1642 aa)    
Predicted Functional Partners:
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.760
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.760
nlgn1
Neuroligin 1.
   
 0.635
lrrtm2
Leucine rich repeat transmembrane neuronal 2.
   
 0.613
Nlgn3
Neuroligin 3a.
   
 0.586
nlgn3b
Neuroligin 3b.
   
 0.586
cd248
Uncharacterized protein.
      
 0.559
LOC101166995
Zinc finger protein 646.
      
 0.559
nlgn2
COesterase domain-containing protein.
   
 0.559
nlgn2-2
Neuroligin 2a.
   
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.