STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156692Cyclic nucleotide gated channel beta 3, tandem duplicate 1. (748 aa)    
Predicted Functional Partners:
LOC101154876
Cyclic nucleotide-binding domain-containing protein.
  
0.967
cnga2
Cyclic nucleotide gated channel alpha 2b.
  
0.966
LOC101162405
Cyclic nucleotide gated channel subunit alpha 4.
  
0.966
LOC101174653
Cyclic nucleotide gated channel subunit alpha 1b.
  
0.966
ENSORLP00000043644
Cyclic nucleotide gated channel subunit alpha 1a.
  
0.966
cnga3
Cyclic nucleotide gated channel subunit alpha 3a.
  
0.966
LOC101170498
Cyclic nucleotide-binding domain-containing protein.
  
0.963
ENSORLP00000031918
Cyclic nucleotide gated channel beta 1a.
  
  
 
0.903
LOC101157535
Si:dkey-44k1.5.
  
  
 
0.903
LOC101156926
Cyclic nucleotide gated channel beta 3, tandem duplicate 2.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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