Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
unc50Unc-50 homolog (C. elegans). (257 aa)    
Predicted Functional Partners:
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.696
gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 
 0.672
arfrp1
ADP-ribosylation factor related protein 1.
    
 
 0.668
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
   
  
 0.638
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
  
 0.619
uxs1
UDP-glucuronate decarboxylase 1.
      
 0.613
nipa2
NIPA magnesium transporter 2.
      
 0.611
LOC101157158
Thioredoxin domain-containing protein.
      
 0.607
TMX3
Thioredoxin related transmembrane protein 3.
      
 0.607
LOC101175074
RIC3 domain-containing protein.
      
 0.605
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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