LOC101168554 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101168554

Transmembrane protein 238a. (104 aa)

Predicted Functional Partners:

LOC101170553

0.600

mecr

0.583

rfxap

0.571

smim4

0.464

ldah

0.462

sult6b1

0.447

tmem97

0.409

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101168554	LOC101170553	ENSORLP00000007497	ENSORLP00000020619	Transmembrane protein 238a.	NME/NM23 family member 8; Belongs to the NDK family.	0.600
LOC101168554	ldah	ENSORLP00000007497	ENSORLP00000026262	Transmembrane protein 238a.	Lipid droplet associated hydrolase.	0.462
LOC101168554	mecr	ENSORLP00000007497	ENSORLP00000017989	Transmembrane protein 238a.	Mitochondrial trans-2-enoyl-CoA reductase.	0.583
LOC101168554	rfxap	ENSORLP00000007497	ENSORLP00000004908	Transmembrane protein 238a.	Regulatory factor X-associated protein.	0.571
LOC101168554	smim4	ENSORLP00000007497	ENSORLP00000012879	Transmembrane protein 238a.	Small integral membrane protein 4.	0.464
LOC101168554	sult6b1	ENSORLP00000007497	ENSORLP00000029241	Transmembrane protein 238a.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.447
LOC101168554	tmem97	ENSORLP00000007497	ENSORLP00000029044	Transmembrane protein 238a.	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	0.409
LOC101170553	LOC101168554	ENSORLP00000020619	ENSORLP00000007497	NME/NM23 family member 8; Belongs to the NDK family.	Transmembrane protein 238a.	0.600
ldah	LOC101168554	ENSORLP00000026262	ENSORLP00000007497	Lipid droplet associated hydrolase.	Transmembrane protein 238a.	0.462
ldah	smim4	ENSORLP00000026262	ENSORLP00000012879	Lipid droplet associated hydrolase.	Small integral membrane protein 4.	0.762
ldah	tmem97	ENSORLP00000026262	ENSORLP00000029044	Lipid droplet associated hydrolase.	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	0.610
mecr	LOC101168554	ENSORLP00000017989	ENSORLP00000007497	Mitochondrial trans-2-enoyl-CoA reductase.	Transmembrane protein 238a.	0.583
rfxap	LOC101168554	ENSORLP00000004908	ENSORLP00000007497	Regulatory factor X-associated protein.	Transmembrane protein 238a.	0.571
smim4	LOC101168554	ENSORLP00000012879	ENSORLP00000007497	Small integral membrane protein 4.	Transmembrane protein 238a.	0.464
smim4	ldah	ENSORLP00000012879	ENSORLP00000026262	Small integral membrane protein 4.	Lipid droplet associated hydrolase.	0.762
smim4	tmem97	ENSORLP00000012879	ENSORLP00000029044	Small integral membrane protein 4.	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	0.715
sult6b1	LOC101168554	ENSORLP00000029241	ENSORLP00000007497	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Transmembrane protein 238a.	0.447
tmem97	LOC101168554	ENSORLP00000029044	ENSORLP00000007497	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	Transmembrane protein 238a.	0.409
tmem97	ldah	ENSORLP00000029044	ENSORLP00000026262	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	Lipid droplet associated hydrolase.	0.610
tmem97	smim4	ENSORLP00000029044	ENSORLP00000012879	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.	Small integral membrane protein 4.	0.715