Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNTA1Syntrophin alpha 1. (488 aa)    
Predicted Functional Partners:
sntg1
Syntrophin, gamma 1.
    
0.956
H2MTB4_ORYLA
Syntrophin, gamma 2.
    
0.956
sntb2
Syntrophin, beta 2.
  
  
 
0.904
sntb1
Syntrophin, basic 1.
  
  
 
0.903
dag1
Dystroglycan 1.
    
 0.874
LOC101165732
Peptidase S72 domain-containing protein.
    
 0.874
tox2
TOX high mobility group box family member 2.
    
 
 0.860
sgcg
Sarcoglycan, gamma.
     
 0.818
KIF5A
Kinesin family member 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.810
LOC101161925
Sarcoglycan, alpha.
    
 0.806
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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