STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp16ZnMc domain-containing protein. (612 aa)    
Predicted Functional Partners:
timp3
NTR domain-containing protein.
   
 0.655
timp-2b
Tissue inhibitor of metalloproteinase-2b.
   
 0.625
timp2
Tissue inhibitor of metalloproteinase-2a.
   
 0.625
H2ME57_ORYLA
V-set immunoregulatory receptor.
      
 0.487
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.468
LOC101164922
Cathepsin K; Belongs to the peptidase C1 family.
   
 
 0.446
mep1b
Meprin A subunit.
    
 0.435
papln
Papilin a, proteoglycan-like sulfated glycoprotein.
    
 0.429
LOC100049240
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
 0.426
LOC101156669
Matrix metallopeptidase 13b.
  
0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.