STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156124Coronin; Belongs to the WD repeat coronin family. (507 aa)    
Predicted Functional Partners:
LOC101160357
CD248 molecule, endosialin a.
   
 
 0.672
eml3
EMAP like 3.
   
 
 0.665
mta2
Metastasis associated 1 family, member 2.
   
  
 0.661
taf6l
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
      
 0.655
Tmem223
Transmembrane protein 223.
      
 0.653
ppme1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
      
 0.653
rce1
Ras converting CAAX endopeptidase 1a.
      
 0.651
nxf1
Zgc:153681.
      
 0.605
actr2
Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.
   
 
 0.545
LOC101157161
Zgc:101810; Belongs to the actin family.
   
 
 0.545
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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