STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hebp3Heme-binding protein 3. (213 aa)    
Predicted Functional Partners:
pef1
Penta-EF-hand domain containing 1.
    
   0.667
pdcd6
Programmed cell death 6.
    
   0.667
lrpprc
Leucine-rich pentatricopeptide repeat containing.
    
 
 0.580
LOC101160234
Bromo domain-containing protein.
      
 0.498
LOC101164801
Endonuclease, polyU-specific C.
      
 0.493
uxt
Ubiquitously-expressed, prefoldin-like chaperone.
      
 0.474
H2L522_ORYLA
Ig-like domain-containing protein.
      
 0.467
H2LER6_ORYLA
Uncharacterized protein.
      
 0.467
LOC101170951
Zgc:114181.
      
 0.467
LOC101173833
Fetuin B.
      
 0.467
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.