STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LNC9_ORYLAArginine/serine-rich coiled-coil 2. (354 aa)    
Predicted Functional Partners:
H2M255_ORYLA
RNA binding motif protein 25a.
   
  
 0.672
LOC101165683
RNA binding motif protein 25b.
   
  
 0.672
ENSORLP00000045060
RRM domain-containing protein.
   
  
 0.672
H2M348_ORYLA
Tudor-knot domain-containing protein.
   
    0.592
arid4b
Translocase of outer mitochondrial membrane 20.
   
    0.592
ythdc1
YTH domain containing 1.
   
    0.591
Arid4a
Tudor domain-containing protein.
   
    0.536
znf277
Zinc finger protein 277.
    
 
 0.521
il34
Interleukin 34.
   
 0.512
Kitlg
Kit ligand a.
    
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.