Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170785Sortilin related VPS10 domain containing receptor 1. (1240 aa)    
Predicted Functional Partners:
LOC101169531
Sortilin.
    
 
 0.612
LOC101158853
Sortilin.
    
 
 0.612
gak
Cyclin G associated kinase.
     
 0.601
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.559
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.550
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.550
LOC101157659
Sortilin.
    
 
 0.517
vps26b
VPS26, retromer complex component B.
    
 
 0.481
vps26a
VPS26, retromer complex component A.
    
 
 0.481
LOC101170271
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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