Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tctn3DUF1619 domain-containing protein. (608 aa)    
Predicted Functional Partners:
B9d2
B9 domain containing 2.
    
 0.973
b9d1
B9 protein domain 1.
    
 0.963
tmem67
Transmembrane protein 67.
     
 0.918
cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 0.908
LOC101160942
C2 domain-containing protein.
    
 0.908
mks1
MKS transition zone complex subunit 1.
    
 0.906
ahi1
Abelson helper integration site 1.
    
 0.898
tmem231
Transmembrane protein 231.
    
 
 0.871
TMEM216
Transmembrane protein 216.
     
 0.865
LOC101171982
Tr-type G domain-containing protein.
    
 0.765
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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