STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tctn3DUF1619 domain-containing protein. (608 aa)    
Predicted Functional Partners:
B9d2
B9 domain containing 2.
    
 0.876
b9d1
B9 protein domain 1.
    
 0.868
mks1
MKS transition zone complex subunit 1.
    
 0.827
tmem67
Transmembrane protein 67.
   
 
 0.808
TMEM216
Transmembrane protein 216.
     
 0.806
ahi1
Abelson helper integration site 1.
    
 0.789
cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 0.775
LOC101160942
C2 domain-containing protein.
    
 0.775
LOC101171982
Tr-type G domain-containing protein.
    
 0.695
EEF2
Eukaryotic translation elongation factor 2b.
    
 0.695
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.