STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem147Transmembrane protein 147. (225 aa)    
Predicted Functional Partners:
ncln
Nicalin.
    
 
 0.990
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.952
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.938
ccdc47
Coiled-coil domain containing 47.
   
 
 0.937
lin52
Lin-52 DREAM MuvB core complex component.
   
 0.887
tfdp1
Transcription factor.
   
 0.884
rbl1
Retinoblastoma-like 1 (p107).
    
 0.875
LOC101163550
Nodal modulator.
   
 
 0.871
emc6
ER membrane protein complex subunit 6.
   
 
 0.867
wdr83os
WD repeat domain 83 opposite strand.
   
 
 0.851
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.