Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mfsd1Major facilitator superfamily domain containing 1. (442 aa)    
Predicted Functional Partners:
glmp
Glycosylated lysosomal membrane protein.
    
 
 0.817
SLC49A3
Solute carrier family 49 member 3.
      
 0.643
gfm1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
     
 0.601
mlf1
Myeloid leukemia factor 1.
      
 0.579
mfsd3
Major facilitator superfamily domain containing 3.
      
 0.563
mfsd8
Major facilitator superfamily domain containing 8.
   
  
 0.557
lrrc34
Leucine rich repeat containing 34.
      
 0.498
nudt9
Nudix (nucleoside diphosphate linked moiety X)-type motif 9.
    
 0.492
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
    
   0.468
slc22a15
Solute carrier family 22 member 15.
    
 
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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