Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
msantd1Myb/SANT-like DNA-binding domain containing 1. (276 aa)    
Predicted Functional Partners:
snupn
Snurportin 1.
      
 0.716
sap130
Sin3A-associated protein a.
      
 0.716
ostm1
Osteoclastogenesis associated transmembrane protein 1.
      
 0.638
rcl1
RNA terminal phosphate cyclase-like 1.
      
 0.617
snx29
Sorting nexin 29.
      
 0.598
smoc1
SPARC related modular calcium binding 1.
      
 0.585
smoc2
SPARC related modular calcium binding 2.
      
 0.585
vwa8
Von Willebrand factor A domain containing 8.
      
 0.550
cdadc1
Cytidine and dCMP deaminase domain containing 1.
      
 0.505
vps33a
VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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