STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167549Potassium channel tetramerization domain containing 16a. (423 aa)    
Predicted Functional Partners:
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.598
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.598
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.542
commd4
COMM domain containing 4.
     
  0.490
ccdc22
Coiled-coil domain containing 22.
     
  0.490
LOC101158778
COMM domain containing 5.
     
  0.485
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.443
LOC101161115
TIP120 domain-containing protein.
     
  0.432
cand1
Cullin-associated and neddylation-dissociated 1.
     
  0.432
commd9
COMM domain containing 9.
     
  0.423
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.