Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171274Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.854
LOC101167232
Epsin 1.
    
 
 0.663
epn2
Epsin 2.
    
 
 0.663
ENSORLP00000026063
Uncharacterized protein.
    
 
 0.663
ENSORLP00000034843
annotation not available
    
 
 0.663
ENSORLP00000037090
Uncharacterized protein.
    
 
 0.663
LOC101158708
Zgc:194578.
    
 
 0.663
LOC101168623
Epsin 3a.
    
 
 0.663
ENSORLP00000040714
Uncharacterized protein.
    
 
 0.663
LOC105358592
Uncharacterized protein.
    
 
 0.663
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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