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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171274Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.795
ENSORLP00000032741
Zinc and ring finger 2a.
      
 0.690
rapsn
Receptor-associated protein of the synapse, 43kD.
      
 0.672
LOC101161115
TIP120 domain-containing protein.
     
 0.616
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.616
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
     
 0.582
mrpl15
Mitochondrial ribosomal protein L15.
      
 0.560
c14h21orf91
Zgc:110006.
      
 0.559
LOC101155936
NBR1 autophagy cargo receptor b.
   
 
 0.524
nbr1
NBR1 autophagy cargo receptor a.
   
 
 0.524
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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