STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mto1Mitochondrial tRNA translation optimization 1. (665 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 
 0.989
supt7l
SPT7 like, STAGA complex gamma subunit.
   
  
 0.927
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.913
ccdc127
Coiled-coil domain containing 127a.
      
 0.902
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
      
 0.842
LOC101174956
Progestin and adipoQ receptor family member IVb.
      
 0.825
LOC101171445
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.819
adprh
ADP-ribosylarginine hydrolase.
   
  
 0.793
sult1a4
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.791
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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