Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2LNH2_ORYLASCHIP-1 domain-containing protein. (518 aa)    
Predicted Functional Partners:
scoc
Short coiled-coil protein a.
    
   0.759
tnfsf12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
      
 0.718
heatr5b
HEAT repeat containing 5B.
      
 0.607
mlf1
Myeloid leukemia factor 1.
      
 0.598
pop4
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.591
LOC101174824
Zgc:77486.
      
 0.589
zfand5
Zinc finger, AN1-type domain 5a.
      
 0.589
LOC101161739
Zinc finger, AN1-type domain 5b.
      
 0.589
lrrc34
Leucine rich repeat containing 34.
      
 0.571
LOC101155741
Uncharacterized protein.
   
  
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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