Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LNI0_ORYLAUncharacterized protein. (562 aa)    
Predicted Functional Partners:
Muc5ac
VWFD domain-containing protein.
 
 
0.934
ENSORLP00000035826
VWFD domain-containing protein.
 
     
0.900
H2LNA0_ORYLA
Uncharacterized protein.
 
     
0.897
H2LNA1_ORYLA
Uncharacterized protein.
 
     
0.885
MSL3
MSL complex subunit 3.
    
 0.727
heg1
Heart development protein with EGF-like domains 1.
   
 0.631
LOC101156373
MSL complex subunit 2.
    
 0.625
MSL2
MSL complex subunit 2.
    
 0.625
maml1
Mastermind-like transcriptional coactivator 1.
   
 0.607
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.594
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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