STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ngrnNeugrin, neurite outgrowth associated. (309 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
    
 
 0.798
trub2
TruB pseudouridine (psi) synthase family member 2.
    
 
 0.684
LOC101164300
RNA pseudouridine synthase D4.
    
 
 0.662
gtpbp10
GTP-binding protein 10 (putative).
   
  
 0.567
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 
 0.548
LOC101165376
Pentatricopeptide repeat domain 1.
    
 
 0.524
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
   
    0.517
rcc1l
RCC1 like.
    
 
 0.487
mrm3
Mitochondrial rRNA methyltransferase 3a.
    
 
 0.477
mtg2
Mitochondrial ribosome-associated GTPase 2.
   
  
 0.424
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.