STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175201LsmAD domain-containing protein. (1042 aa)    
Predicted Functional Partners:
Nufip2
Nuclear FMR1 interacting protein 2.
   
 
 0.982
LOC101162877
LSM12 homolog b.
    
 
 0.979
fam98a
Uncharacterized protein.
    
 
 0.952
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
    
 
 0.940
LOC101166148
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.940
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
   
 
 0.831
g3bp2
Zgc:56304.
   
 
 0.831
impact
Impact RWD domain protein.
    
 
 0.830
LOC101160424
ADNP homeobox 2b.
      
 0.823
atxn2
Ataxin 2.
   
 
 0.813
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.