Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d20TBC1 domain family, member 20. (428 aa)    
Predicted Functional Partners:
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic).
      
 0.890
LOC101161080
Uncharacterized protein.
    
 0.823
LOC101162421
RAB1A, member RAS oncogene family a.
    
 0.823
LOC101173484
Zgc:171927.
    
 0.770
rab3gap1
RAB3 GTPase activating protein subunit 1.
      
 0.747
rab2a
RAB2A, member RAS oncogene family.
     
 0.659
LOC101162204
TBC1 domain family, member 7.
      
 0.602
tbc1d16
TBC1 domain family, member 16.
      
 0.599
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
      
 0.599
reep2
Receptor expression-enhancing protein.
      
 0.597
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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