STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LARP4BLa ribonucleoprotein domain family member 4B. (784 aa)    
Predicted Functional Partners:
rack1
Receptor for activated C kinase 1.
    
 
 0.721
zc3h12b
Zinc finger CCCH-type containing 12B.
      
 0.636
LOC101166987
Potassium inwardly-rectifying channel, subfamily J, member 9.
      
 0.563
LACTB2
Lactamase beta 2.
      
 0.563
LOC101166706
La ribonucleoprotein domain family, member 6a.
      
 0.535
larp7
La ribonucleoprotein domain family, member 7.
      
 0.526
ncoa2
Nuclear receptor coactivator.
      
 0.508
MTDH
Uncharacterized protein.
   
 
 0.495
sarnp
SAP domain containing ribonucleoprotein.
      
 0.491
ccdc102a
Coiled-coil domain containing 102A.
      
 0.491
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.