STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccbe1Collagen and calcium binding EGF domains 1. (397 aa)    
Predicted Functional Partners:
vegfc
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
    
 0.751
LOC101172200
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
      
 0.626
itgbl1
Integrin, beta-like 1.
    
 0.590
LOC101167013
ADAM metallopeptidase with thrombospondin type 1 motif, 3.
      
 0.562
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
   
 
 0.514
nuak1
NUAK family, SNF1-like kinase, 1b.
      
 0.501
ENSORLP00000042479
Link domain-containing protein.
     
 0.497
egf
Epidermal growth factor.
    
 0.494
sox18
Uncharacterized protein.
      
 0.483
LOC100049480
Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
      
 0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.