Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccbe1Collagen and calcium binding EGF domains 1. (397 aa)    
Predicted Functional Partners:
vegfc
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
    
 0.916
LOC101172200
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
      
 0.737
sox18
Uncharacterized protein.
      
 0.700
ENSORLP00000042479
Link domain-containing protein.
     
 0.695
LOC101167013
ADAM metallopeptidase with thrombospondin type 1 motif, 3.
      
 0.658
phf5a
PHD finger protein 5A.
      
 0.648
suclg2
Succinate-CoA ligase, GDP-forming, beta subunit.
      
 0.637
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
     
 0.577
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
    
 0.556
itgbl1
Integrin, beta-like 1.
    
 0.550
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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