STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znfx1Zinc finger, NFX1-type containing 1. (1904 aa)    
Predicted Functional Partners:
adar
Adenosine deaminase RNA specific.
   
  
 0.641
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.562
nrde2
NRDE-2, necessary for RNA interference, domain containing.
      
 0.560
tent4b
Terminal nucleotidyltransferase 4B.
    
 
 0.548
LOC101163355
Uncharacterized protein.
    
 
 0.548
tent4a
Terminal nucleotidyltransferase 4A.
    
 
 0.548
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
   
  
 0.529
LOC101156100
Uncharacterized protein; Belongs to the argonaute family.
    
 
 0.509
LOC101165653
Uncharacterized protein; Belongs to the argonaute family.
    
 
 0.509
LOC101167465
Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily.
    
 
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.