Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc39a13Solute carrier family 39 member 13. (379 aa)    
Predicted Functional Partners:
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.902
slc30a4
Solute carrier family 30 member 4.
   
 0.877
slc30a6
Solute carrier family 30 member 6.
   
 0.870
LOC101163600
Uncharacterized protein.
    
 
 0.864
slc30a3
Solute carrier family 30 member 2.
    
 
 0.855
slc30a7
Solute carrier family 30 member 7.
   
 0.848
slc30a1
Solute carrier family 30 member 1a.
   
 0.824
slc30a8
Solute carrier family 30 member 8.
   
 0.809
slc30a5
Solute carrier family 30 member 5.
   
 0.778
bms1
BMS1 ribosome biogenesis factor.
      
 0.727
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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