Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175439Double C2-like domains, alpha. (441 aa)    
Predicted Functional Partners:
H2M963_ORYLA
Uncharacterized protein.
 
    
 0.739
LOC101154838
Double C2-like domains, delta.
      
 0.462
LOC101172416
Uncharacterized protein.
    
 
 0.452
rab27a
RAB27A, member RAS oncogene family.
    
 
 0.452
rab27b
RAB27B, member RAS oncogene family.
    
 
 0.452
cebpz
CCAAT enhancer binding protein zeta.
    
 
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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