STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173875Uncharacterized protein. (898 aa)    
Predicted Functional Partners:
cbx2
Chromo domain-containing protein.
    
 0.849
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
    
 0.826
rnf2
Ring finger protein 2.
    
 0.822
RING1
Ring finger protein 1.
    
 0.822
ENSORLP00000026150
Chromobox homolog 6a.
    
 0.819
LOC101160413
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.815
cbx8
Chromobox homolog 8b.
    
 0.815
LOC101172611
Chromo domain-containing protein.
    
 0.791
pcgf2
RING-type domain-containing protein.
    
 0.787
pcgf5
Polycomb group ring finger 5a.
    
 0.773
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.