Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nexmifNeurite extension and migration factor b. (1490 aa)    
Predicted Functional Partners:
rlim
Ring finger protein, LIM domain interacting.
 
    
 0.755
CCDC112
Coiled-coil domain containing 112.
      
 0.601
cop1
COP1 E3 ubiquitin ligase.
      
 0.578
dio2
Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).
      
 0.569
ephx4
Epoxide hydrolase 4.
      
 0.569
LOC101167614
Golgi apparatus membrane protein TVP23 homolog.
      
 0.563
gsc
Goosecoid.
      
 0.509
mettl27
Methyltransferase like 27.
      
 0.492
zc4h2
Zinc finger, C4H2 domain containing.
      
 0.451
LOC101174360
Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 2.
      
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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