Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ipo5Karyopherin (importin) beta 3. (1094 aa)    
Predicted Functional Partners:
kpnb1
Karyopherin (importin) beta 1.
   
 
 0.987
cse1l
CSE1 chromosome segregation 1-like (yeast).
   
 
 0.959
ipo4
Importin 4.
   
 
0.950
nup98
Nucleoporin 98.
   
 
 0.887
ipo8
Importin 8.
   
 
 0.880
ipo7
Importin 7.
   
 
 0.880
LOC101175126
Exportin 1 (CRM1 homolog, yeast) a.
   
 
 0.876
LOC101170539
Exportin 1 (CRM1 homolog, yeast) b.
   
 
 0.876
NUP54
Nucleoporin 54.
   
 
 0.875
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
   
 
 0.873
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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