STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glod5Glyoxalase domain containing 5. (138 aa)    
Predicted Functional Partners:
taf1b
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
    
 0.776
mcee
Methylmalonyl CoA epimerase.
   
  
 0.773
gcna
Germ cell nuclear acidic peptidase.
    
 0.696
hpdl
4-hydroxyphenylpyruvate dioxygenase.
      
 0.693
tmem231
Transmembrane protein 231.
      
 0.606
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
      
 0.601
mrrf
Mitochondrial ribosome recycling factor.
     
 0.601
kars1
Lysine--tRNA ligase.
   
 0.596
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.581
LOC101157460
4-hydroxyphenylpyruvate dioxygenase.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.